other:
Article Title: TBC1D4 antagonizes RAB2A-mediated autophagic and endocytic pathways.
Article Snippet: Macroautophagic/autophagic and endocytic pathways play essential roles in maintaining homeostasis at different levels.. It remains poorly understood how both pathways are coordinated and fine-tuned for proper lysosomal degradation of diverse cargoes.. We and others recently identified a Golgi-resident RAB GTPase, RAB2A, as a positive regulator that controls both autophagic and endocytic pathways.
Article Title: Tumor-derived lactate promotes resistance to bevacizumab treatment by facilitating autophagy enhancer protein RUBCNL expression through histone H3 lysine 18 lactylation (H3K18la) in colorectal cancer.
Article Snippet: Primary antibodies used in this study are used in this study are anti-Pan Kla (Jingjie, PTM-1401RM), anti-H3K18la (Jingjie, PTM-1406RM), anti-H3K9la (Jingjie, PTM-1419RM), anti-H4K8la (Jingjie, PTM-1415RM), antiH4K12la (Jingjie, PTM-1411RM), anti-HIF1A (Abcam, ab179483), anti-Histone H3 (Cell Signaling Technology, 4499), anti-LDHA (Proteintech, 19987–1-AP), anti-PARP (Cell Signaling Technology, 9532), anti-CASP3 (Cell Signaling Technology, 9662), anti-RUBCNL (Abcam, ab246954), anti-EP300 (Abcam, ab275378), anti-SQSTM1 (Cell Signaling Technology, 8025), anti-LC3 (Cell Signaling Technology, 3868), anti-FLAG tag (Proteintech, 60002–1-Ig), anti-HA tag (Proteintech, 51064–2-AP), anti-BECN1 (Proteintech, 11306–1-AP), anti-PIK3C3/VPS34 (Cell Signaling Technology, 4263), anti-UVRAG (Cell Signaling Technology, 13115) and anti-TUBB/β-tubulin (Proteintech, 10068–1-AP).
Article Title: Tumor-derived lactate promotes resistance to bevacizumab treatment by facilitating autophagy enhancer protein RUBCNL expression through histone H3 lysine 18 lactylation (H3K18la) in colorectal cancer
Article Snippet: Primary antibodies used in this study are used in this study are anti-Pan Kla (Jingjie, PTM-1401RM), anti-H3K18la (Jingjie, PTM-1406RM), anti-H3K9la (Jingjie, PTM-1419RM), anti-H4K8la (Jingjie, PTM-1415RM), anti-H4K12la (Jingjie, PTM-1411RM), anti-HIF1A (Abcam, ab179483), anti-Histone H3 (Cell Signaling Technology, 4499), anti-LDHA (Proteintech, 19987–1-AP), anti-PARP (Cell Signaling Technology, 9532), anti-CASP3 (Cell Signaling Technology, 9662), anti-RUBCNL (Abcam, ab246954), anti-EP300 (Abcam, ab275378), anti-SQSTM1 (Cell Signaling Technology, 8025), anti-LC3 (Cell Signaling Technology, 3868), anti-FLAG tag (Proteintech, 60002–1-Ig), anti-HA tag (Proteintech, 51064–2-AP), anti-BECN1 (Proteintech, 11306–1-AP), anti-PIK3C3/VPS34 (Cell Signaling Technology, 4263), anti-UVRAG (Cell Signaling Technology, 13115) and anti-TUBB/β-tubulin (Proteintech, 10068–1-AP).
Article Title: DJ-1 binds to Rubicon to Impair LC-3 Associated Phagocytosis.
Article Snippet: The following primary antibodies were used in this study: anti-DJ-1 (Cell Signalling Technology 5933, 1:1000); anti-β-actin (Sigma Aldrich A1978, 1:1000); anti-LC3-II (Abcam AB48394, 1:1000); anti-Beclin-1 (Cell Signalling Technology 3738, 1:1000); anti-UVRAG (Cell Signalling Technology 5320, 1:1000); anti-VPS34 (Cell Signalling Technology 4263, 1:1000); anti-Rubicon (Cell Signalling Technology 8465, 1:1000); anti-Atg5 (Cell Signalling Technology 12994, 1:1000); anti-Atg7 (Cell Signalling Technology 8558, 1:1000); antiGAPDH (Cell Signalling Technology 14C10, 1:1000); anti-p62 (Cell Signalling Technology 5114; 1:1000); anti-MBP (Santa Cruz SC13564, 1:1000); and anti-His (Santa Cruz SC-8036, 1:1000).
Western Blot:Article Title: PDCD6 modulates LC3-associated phagocytosis-mediated antimicrobial defense by regulating lactate metabolism
Article Snippet: TRIzol Reagent (R401-01) was from Vazyme. .. Antibodies for immunoblotting included anti-phospho-p40phox (Thr154) (4311), anti-phospho-AMPKα (Thr172) (2535S), anti-AMPKα (D63G4) (5832S), anti-phospho-S6 Ribosomal Protein (Ser235/236) (4856S), anti-S6 Ribosomal Protein (2217S), anti-phospho-p70 S6 Kinase (Thr389) (9234S), anti-p70 S6 Kinase (9202S), anti-Atg5 (12994), anti-Beclin-1 (3738), anti-Atg7 (8558), anti-Atg16L1 (8089), anti-LC3B (2775), anti-SQSTM1/p62 (5114), anti- PI3K (D9A5) (4263), anti-Rubicon (8465), anti-UVRAG (13115), anti-phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (4370), anti-p44/42 MAPK (Erk1/2) (4695), antiphospho-JNK (Thr183/Tyr185) (4668), anti-JNK2 (9258), anti-phospho-p38 MAPK (Thr180/Tyr182) (9211), anti-p38 MAPK (8690), anti-phospho-IKKα/β (Ser176/180) (2697), anti-IKKβ (2678), anti-phosphoNF-κB p65 (Ser536) (3033), anti-NF-κB p65 (8242), anti-phospho-IκBα (Ser32) (2859), anti-IκBα (9242), anti-phospho-ULK1 (Ser757) (6888S) and anti-ULK1 (R600) (4773S) were from Cell Signaling Technology. .. Anti-Caspase-1 (p20) (AG-20B-0042) was from Adipogen.
Immunofluorescence:Article Title: RAB5c controls the assembly of non-canonical autophagy machinery to promote phagosome maturation and microbicidal function of macrophages
Article Snippet: .. Anti-RAB5c [Thermo Fisher Scientific, PA5-39408; IB, 1:2,000; Immunofluorescence (IF), 1:300], anti-GAPDH [Cell Signalling Technology (CST), Clone D16H11, 5174T, IB, 1:10,000], anti-β-actin (CST, Clone 8H10D10, 12262, IB, 1:5,000), anti-Microtubule-associated protein 1 light chain B (anti-MAPLC3B/LC3B; CST, 27759, IB, 1:1,000), anti-LC3 (LC3A/LC3B/LC3C; MBL Int., PM036, IF: 1:250), anti-RAB5a (CST, 2143, IB, 1:1,000), anti-RAB5b (Santa Cruz, Clone F-9, sc373725, IB, 1:1,000), anti-EEA1 (CST, Clone C45B10, 3288, IB, 1:1,000), anti-UNC93B (Abcam, 69497, IB, 1:3,000), anti-GM130 (MBL, Clone 5G8, M1793, IB, 1:500), anti-UVRAG (CST, Clone D2Q1Z, 13115, IB, 1:1,000), anti-Phosphatidylinositol 3-kinase catalytic subunit type 3 (anti-PIK3C3/VPS34; Clone D9A5, CST 4263, IB, 1:1,000), anti-Beclin1 (CST, 3738, IB, 1:1,000), anti-Rubicon (Clone D9F7, CST, 8465, IB, 1:1,000), anti-p-p47 phox (S328) (Abcam, 111855, IF, 1:50), anti-p47 phox (Abcam, Clone erp27205, 308256, IB, 1:1,000; IF, 1:250), anti-p-p40 phox (Thr514) (CST, 4311, IB, 1:1,000), anti-p22 phox (Abcam, 75941 IB, 1:1,000), anti-gp91 phox (BD Bioscience, Clone53, 611414, IB, 1:2,000), anti-ERK1/2 (CST, Clone 1375F, 4695, IF, 1:500), anti-p-ERK1/2(Thr202/204) (CST, Clone 197G2, 9106, IF, 1:100), anti-ATP6V0d1 (Abcam, Clone erp18320-38, IB, 1:1,000), anti-ATP6V1A (Abcam, Clone erp19270, 199326, IB, 1:4,000; IF, 1:250), anti-ATG16L1 (MBL, Clone 1F12, M150-3, IB, 1:1,000), anti-ATG5/12 (CST, Clone D5F5U, 12994, IB, 1:1,000), anti-LAMP1 (CST, Clone E5N9Z, #99437, IF, 1:150), Alexa Fluor 647 polyclonal goat anti-rabbit IgG (Thermo Fisher Scientific, A21244, IF: 1:750), Alexa Fluor 488 polyclonal donkey anti-mouse IgG (Thermo Fisher Scientific, A21202, IF: 1:750), Alexa Fluor 647 polyclonal donkey anti-mouse IgG (Thermo Fisher Scientific, A31571, IF: 1:750), HRP-conjugated anti-rabbit IgG (CST, 7074, IB: 1:5,000), and HRP-conjugated anti-mouse IgG (CST, 7076, IB: 1:5,000) were used as indicated in manufactures′ datasheets. ..
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